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Hey,
I want to use Bonsai in order to run fiber-photometry recording in conjunction with a Bpod protocol.
To understand how Bpod can communicate with Bonsai, I looked for an example file. I saw this page in the Bpod Wiki: 
https://sites.google.com/site/bpoddocume...nsaiconfig

However, I couldn't find the example app or file provided in the page: /Bpod/Bpod System Files/Plugins/Bonsai/Bonsai Example/
and
/Bpod/Bpod System Files/ExampleMatrices: SoftCodeTriggeredStateChange.m

I'd be happy to get your help in understanding how Bpod can send a softcode or a TTL to bonsai.
Thanks!
Yonatan

Hi,

I am recording my behavior with an overhead camera while it is controlled by my Bpod setup.  For the sake of determining precise location specific datapoints, I want to be able to know precisely in my Bpod data file what time in the video recording certain events are, and I would like to attempt to do this by feeding the camera's activity into the Bpod via a connection like a TTL pulse.  However, my initial attempts to do so do not register as a TTL pulse while the camera is on.  Any ideas how I might be able to accomplish this synchronization?

Thanks,

Nick

Hi Josh,

I would like to ask if there's a way I could save the data that would have been logged into the SD card into a csv file with some lines of code in the protocol? 

This is the example protocol that I used to run the RotaryEncoderModule. https://pybpod.readthedocs.io/projects/p...ge-example And would like to have the data saved into a csv like that of the GUI. Thanks!

Hi Josh,

I am having trouble connecting the RotaryEncoderModule with my serial port. I have used the code from pybpod_rotaryencoder_module.module_api import RotaryEncoderModule on my script. However when I write: m = RotaryEncoderModule('COM9'), for some reason, it says access denied. Eventhough COM9 works well with the rotary encoder gui.

Moreover, when I try doing just m = RotaryEncoderModule(); and then proceed with codes like m.enable_stream(), for some reason I get error message saying that the object doesn't have such attribute.

I am wondering how could I read out velocity from the rotary encoder module within a protocol? The signal could be read well using a GUI. Thank you!

I noticed that the Bpod 0.5 has more pre-defined output ports for LED and water valve, but the Bpod 2 only has four for each. I need 12 digital outputs channels in total, so I am wondering whether I could extend the output channels(LED or valve part) myself by changing somewhere in the code of Matlab software or firmware.  Thanks!

Hi, I have used an either cable to connect the BPod rotary Encoder Module to The State Machine R2. And then I connected my own treadmill encoder into the 5V, A,V, and GND pin. However, when I click on the rotary encoder module plug-in. for some reason it cannot connect the Serial port eventho I could do so for the port interface module. I am wondering if there's anything special with the BPod Rotary Encoder module. Thank you!

Hi, I would like to ask how should I export my data from each session from Pybpod GUI into a csv file? I couldn't find the ans on the documentations. Thank you!

Hi,
I was wondering if it is possible to use the Arduino shield with an Arduino due to get the Output stream to the Arduino DAC pins.
I tried to play with the code and to combine the code from the DDS module and the blink model but didn't succeed.

Thanks,
Ben

Hi Josh,

I have another issue with the analog input module after I started using TrialManager in my protocol. I am using the analog input module to monitor and record the signals from a joystick. My protocol consists of a state for triggering the start of logging of the analog signals and another state for triggering the stop of logging of the analog signals. I also have a line "BpodSystem.Data.Rawevents.Trial(currentTrial).JS = A.getData.y" at the end of my main loop for saving the voltage data recorded in each trial. This was working fine when I was using an equivalent protocol that is based on RunStateMachine() before. However, once I have changed the code into TrialManager-based, I get the following error immediately or after running a few trials: