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Get original PMP, Toefl c...
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Saving data into csv with...
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Bonsai + Bpod
Forum: Software
Last Post: Yonatan_Fatal
12-02-2020, 02:10 PM
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Looking to syncronize cam...
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12-01-2020, 03:52 PM
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pulsepal voltage output
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11-16-2020, 06:31 PM
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Issue with analog input m...
Forum: Software
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11-16-2020, 06:32 AM
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Rotary Encoder Pybpod Cod...
Forum: Software
Last Post: ali
11-14-2020, 03:51 PM
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Rotary encoder module - u...
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11-12-2020, 08:00 PM
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set tone frequency?
Forum: Software
Last Post: Josh
11-10-2020, 03:34 PM
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Extend the output ports
Forum: Hardware
Last Post: Josh
11-09-2020, 02:23 AM
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» Views: 179

 
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  Bonsai + Bpod
Posted by: Yonatan_Fatal - 12-02-2020, 02:10 PM - Forum: Software - No Replies

Hey,
I want to use Bonsai in order to run fiber-photometry recording in conjunction with a Bpod protocol.
To understand how Bpod can communicate with Bonsai, I looked for an example file. I saw this page in the Bpod Wiki: 
https://sites.google.com/site/bpoddocume...nsaiconfig

However, I couldn't find the example app or file provided in the page: /Bpod/Bpod System Files/Plugins/Bonsai/Bonsai Example/
and
/Bpod/Bpod System Files/ExampleMatrices: SoftCodeTriggeredStateChange.m

I'd be happy to get your help in understanding how Bpod can send a softcode or a TTL to bonsai.
Thanks!
Yonatan


  Looking to syncronize camera with Bpod
Posted by: Nick S - 11-24-2020, 03:24 PM - Forum: Software - Replies (2)

Hi,

I am recording my behavior with an overhead camera while it is controlled by my Bpod setup.  For the sake of determining precise location specific datapoints, I want to be able to know precisely in my Bpod data file what time in the video recording certain events are, and I would like to attempt to do this by feeding the camera's activity into the Bpod via a connection like a TTL pulse.  However, my initial attempts to do so do not register as a TTL pulse while the camera is on.  Any ideas how I might be able to accomplish this synchronization?

Thanks,

Nick


  Saving data into csv with RotaryEncoderModule
Posted by: ali - 11-20-2020, 08:15 PM - Forum: Software - Replies (4)

Hi Josh,

I would like to ask if there's a way I could save the data that would have been logged into the SD card into a csv file with some lines of code in the protocol? 

This is the example protocol that I used to run the RotaryEncoderModule. https://pybpod.readthedocs.io/projects/p...ge-example And would like to have the data saved into a csv like that of the GUI. Thanks!


  Rotary Encoder Pybpod Code
Posted by: ali - 11-12-2020, 08:54 PM - Forum: Software - Replies (2)

Hi Josh,

I am having trouble connecting the RotaryEncoderModule with my serial port. I have used the code from pybpod_rotaryencoder_module.module_api import RotaryEncoderModule on my script. However when I write: m = RotaryEncoderModule('COM9'), for some reason, it says access denied. Eventhough COM9 works well with the rotary encoder gui.

Moreover, when I try doing just m = RotaryEncoderModule(); and then proceed with codes like m.enable_stream(), for some reason I get error message saying that the object doesn't have such attribute.

I am wondering how could I read out velocity from the rotary encoder module within a protocol? The signal could be read well using a GUI. Thank you!


  Extend the output ports
Posted by: binbin - 11-07-2020, 07:30 PM - Forum: Hardware - Replies (1)

I noticed that the Bpod 0.5 has more pre-defined output ports for LED and water valve, but the Bpod 2 only has four for each. I need 12 digital outputs channels in total, so I am wondering whether I could extend the output channels(LED or valve part) myself by changing somewhere in the code of Matlab software or firmware.  Thanks!


  Rotary encoder module - unable to connect
Posted by: ali - 11-06-2020, 07:46 PM - Forum: Hardware - Replies (4)

Hi, I have used an either cable to connect the BPod rotary Encoder Module to The State Machine R2. And then I connected my own treadmill encoder into the 5V, A,V, and GND pin. However, when I click on the rotary encoder module plug-in. for some reason it cannot connect the Serial port eventho I could do so for the port interface module. I am wondering if there's anything special with the BPod Rotary Encoder module. Thank you!




  Saving Data into csv using pybpod
Posted by: ali - 11-04-2020, 12:01 AM - Forum: Software - Replies (1)

Hi, I would like to ask how should I export my data from each session from Pybpod GUI into a csv file? I couldn't find the ans on the documentations. Thank you!


  Using Arduino Due with the rotary encoder
Posted by: benef - 11-03-2020, 01:11 PM - Forum: Hardware - Replies (3)

Hi,
I was wondering if it is possible to use the Arduino shield with an Arduino due to get the Output stream to the Arduino DAC pins.
I tried to play with the code and to combine the code from the DDS module and the blink model but didn't succeed.

Thanks,
Ben


  Issue with analog input module while using TrialManager
Posted by: tly627 - 10-26-2020, 03:18 AM - Forum: Software - Replies (8)

Hi Josh,

I have another issue with the analog input module after I started using TrialManager in my protocol. I am using the analog input module to monitor and record the signals from a joystick. My protocol consists of a state for triggering the start of logging of the analog signals and another state for triggering the stop of logging of the analog signals. I also have a line "BpodSystem.Data.Rawevents.Trial(currentTrial).JS = A.getData.y" at the end of my main loop for saving the voltage data recorded in each trial. This was working fine when I was using an equivalent protocol that is based on RunStateMachine() before. However, once I have changed the code into TrialManager-based, I get the following error immediately or after running a few trials:

Code:
Error using ArCOMObject_Ain/read (line 290)
Error: The serial port returned 0 bytes.

Error in BpodAnalogIn/getData (line 381)
           nSamples = double(obj.Port.read(1, 'uint32'));

Error in Joystick_TrialManager (line 226)
       BpodSystem.Data.RawEvents.Trial{currentTrial}.JS = A.getData.y;

Error in run (line 91)
evalin('caller', strcat(script, ';'));

Error in NewLaunchManager>LaunchProtocol (line 707)
run(ProtocolPath);

Error while evaluating DestroyedObject Callback.

For the first few trials that could be run through occasionally, the logging of the analog inputs seems to be terminated at a timing that is earlier than what it should be. Also, the analog input module will go into a "crashed" state such that the red light inside it will be completely turned off and I will have to unplug the USB cable to make it functions again.

Do you know how to fix this issue? 

Many thanks,
Tin 

P.S. I noticed that in TrialManager-based protocol, the serial interface seems to work in a slightly different way? For example, I get an error saying "The last state machine sent was not acknowledged by the Bpod device" if I start logging by "AnalogIn1, ['L' 1]", which didn't occur in my old RunStateMachine-based protocols. This is also not specific to the analog input module, as the same thing happens in "WavePlayer1" as well. However, I was able to solve this issue by using LoadSerialMessages().