Hi Bowey,
If you're using TrialManager, today's release of Bpod Console v1.60 may fix the issue.
If not, please send your protocol file and one example data file to support@sanworks.io and I'll try to replicate the issue here.
A few questions:
-Are you using Adafruit Metro M4 with the and the DIO firmware from here and the Bpod Arduino Shield?
-What MATLAB version, operating system and state machine model are you using?
-What capacitive touch sensor board are you using?
Thanks,
-Josh