Hi Owen,
If you're using an 8-channel analog output module with WavePlayer firmware, you should see a 64 x 8 TriggerProfiles matrix in the object you create with the WavePlayer class. If you're seeing a 64 x 4 matrix, you have the wrong firmware file loaded. If you have 64 x 8, You can set channels 5-8.
To turn off trigger profile mode when you start the protocol that doesn't use trigger profile, use:
W.TriggerProfileEnable = 'Off';
Please let me know if this doesn't work.
Thanks!
-Josh